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stephane ducasse-2
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New baseline

stephane ducasse-2
Hi guys

I continued to split packages into smaller packages :)
Here is the new baseline that I will push for development

I will published a new version 42 but I will not declare it as stable before being sure.

insights:

                package: 'Math-Chromosome' with: [ spec requires: #('Math-Core') ];
                package: 'Math-PrincipleComponentAnalysis' with: [ spec requires: #('Math-UtilsAccumulator') ];
                package: 'Math-RandomDistributionBased' with: [ spec requires: #('Math-DHB-Numerical') ];
                package: 'Math-UtilsDataServer';
               
Then after I will fix the metacello to be sure that we can use versionner because it is getting tedious to manag
all the packages.


Here is the log

- Merge changes made in 41 but lost when the latest configuration was not loaded. in 42
- changes made with didier
    - added hook flat generator in distribution
    - added asArray and dimension
    - CPA first cut
    - distribution based random number generator
- new packages -> new baseline 28
                package: 'Math-Chromosome' with: [ spec requires: #('Math-Core') ];
                package: 'Math-PrincipleComponentAnalysis' with: [ spec requires: #('Math-UtilsAccumulator') ];
                package: 'Math-RandomDistributionBased' with: [ spec requires: #('Math-DHB-Numerical') ];
                package: 'Math-UtilsDataServer';

For now 42 is not declared as stable. Should be done once jenkins is run.

Stef



baseline028: spec
    <version: '0.28-baseline'>
    spec
        for: #common
        do: [
            spec blessing: #baseline.
            spec description: 'After didier hacking + adding more packages'.
           spec author: 'Stephane Ducasse Stinckwich'.
           spec timestamp: '4 March 2016'.
            spec repository: 'http://www.smalltalkhub.com/mc/SergeStinckwich/SciSmalltalk/main'.
            spec
                project: 'SMark'
                    with: [
                            spec
                                className: #ConfigurationOfSMark;
                                versionString: '1.0.1';
                                repository: 'http://smalltalkhub.com/mc/StefanMarr/SMark/main' ];
                project: 'XMLWriter'
                    with: [
                            spec
                                className: #ConfigurationOfXMLWriter;
                                versionString: '2.3.9';
                                repository: 'http://smalltalkhub.com/mc/PharoExtras/XMLWriter/main' ].
            spec
                package: 'Math-Core';
                package: 'Math-Core-Process';
                package: 'Math-Core-Distribution' with: [ spec requires: 'Math-Core' ];
               
                package: 'Math-UtilsAccumulator' with: [ spec requires: #('Math-Core') ];
                package: 'Math-Chromosome' with: [ spec requires: #('Math-Core') ];
                package: 'Math-PrincipleComponentAnalysis' with: [ spec requires: #('Math-UtilsAccumulator') ];
                package: 'Math-RandomDistributionBased' with: [ spec requires: #('Math-DHB-Numerical') ];
                package: 'Math-UtilsDataServer';
               
               
                package: 'Math-Series';
                package: 'Math-DistributionGamma' with: [ spec requires: #('Math-Core-Distribution') ];
                package: 'Math-DistributionBeta' with: [ spec requires: #('Math-DistributionGamma') ];
                package: 'Math-DistributionForHistogram' with: [ spec requires: #('Math-Core-Distribution') ];
                package: 'Math-Random';
   
                package: 'Math-KDTree';
                package: 'Math-Complex';
                package: 'Math-Quaternion' with: [ spec requires: #('Math-Complex') ];
                package: 'Math-DHB-Numerical'
                    with: [
                            spec
                                requires:
                                    #('Math-Core' 'Math-Core-Process' 'Math-Core-Distribution' 'Math-DistributionGamma' 'Math-DistributionBeta' 'Math-DistributionForHistogram' 'Math-StatisticalMoments' 'Math-Series') ];
                package: 'Math-FastFourierTransform' with: [ spec requires: #('Math-Complex') ];
                package: 'ExtendedNumberParser';
                package: 'ArbitraryPrecisionFloat' with: [ spec requires: #('ExtendedNumberParser') ];
                package: 'Math-ComplexExtensions' with: [ spec requires: #('Math-Complex' 'Math-DHB-Numerical') ];
                package: 'Math-DHB-NumericalExtensions' with: [ spec requires: #('Math-DHB-Numerical') ];
                package: 'Math-ODE' with: [ spec requires: #('Math-DHB-Numerical' 'Math-DHB-NumericalExtensions') ];
                package: 'Math-QuaternionExtensions' with: [ spec requires: #('Math-DHB-Numerical' 'Math-Quaternion') ];
                package: 'Math-DHB-wk' with: [ spec requires: #('Math-DHB-Numerical') ];
                package: 'Math-AutomaticDifferenciation' with: [ spec requires: #('Math-DHB-Numerical') ];
                package: 'Math-Quantile';
                package: 'Math-KernelSmoothing' with: [ spec requires: #('Math-Quantile' 'Math-DHB-Numerical') ];
                package: 'Math-KolmogorovSmirnov' with: [ spec requires: #('Math-DHB-Numerical') ];
                package: 'Math-Tests-KolmogorovSmirnov' with: [ spec requires: #('Math-DHB-Numerical' 'Math-KolmogorovSmirnov') ];
                package: 'Math-Tests-Random' with: [ spec requires: #('Math-Random') ];
                package: 'Math-Tests-Complex' with: [ spec requires: #('Math-ComplexExtensions') ];
                package: 'Math-Tests-KDTree' with: [ spec requires: #('Math-KDTree') ];
               
                package: 'Math-Tests-DHB-Numerical' with: [ spec requires: #('Math-DHB-Numerical' 'Math-UtilsDataServer') ];
                package: 'Math-Tests-ODE' with: [ spec requires: #('Math-ODE') ];
                package: 'Math-Tests-Quaternion' with: [ spec requires: #('Math-Quaternion') ];
                package: 'Math-Tests-DHB-wk' with: [ spec requires: #('Math-DHB-wk') ];
                package: 'Math-Tests-AutomaticDifferenciation' with: [ spec requires: #('Math-AutomaticDifferenciation') ];
                package: 'Math-Tests-FastFourierTransform'
                    with: [ spec requires: #('Math-FastFourierTransform' 'Math-DHB-Numerical') ];
                package: 'ArbitraryPrecisionFloatTests' with: [ spec requires: #('ArbitraryPrecisionFloat') ];
                package: 'Math-Accuracy-Core';
                package: 'Math-Tests-Accuracy' with: [ spec requires: #('Math-Accuracy-Core') ];
                package: 'Math-FunctionFit' with: [ spec requires: #('Math-DHB-Numerical' 'Math-Accuracy-Core' 'Math-Core') ];
                package: 'Math-Tests-FunctionFit' with: [ spec requires: #('Math-FunctionFit' 'Math-DHB-wk') ];
                package: 'Math-Benchmarks-KDTree' with: [ spec requires: #('Math-KDTree' 'SMark') ];
                package: 'Math-Accuracy-ODE' with: [ spec requires: #('Math-ODE' 'XMLWriter') ];
                package: 'Math-Benchmarks-ODE' with: [ spec requires: #('Math-ODE' 'SMark' 'XMLWriter') ];
                package: 'Math-Number-Extensions';
                package: 'Math-StatisticalMoments' with: [ spec requires: #('Math-Core' 'Math-DistributionForHistogram') ].
            spec
                group: 'default' with: #('Core' 'Extensions' 'Tests' 'Benchmarks' 'Accuracy');
                group: 'Core'
                    with:
                        #('Math-Complex' 'Math-Quaternion' 'Math-DHB-Numerical' 'Math-Random' 'Math-KDTree' 'Math-ODE' 'ArbitraryPrecisionFloat' 'Math-FastFourierTransform' 'ExtendedNumberParser' 'Math-Quantile' );
                group: 'Tests'
                    with:
                        #('Math-Tests-DHB-Numerical' 'Math-Tests-Complex' 'Math-Tests-Quaternion' 'Math-Tests-Random' 'Math-Tests-ODE' 'Math-Tests-KDTree' 'Math-Tests-DHB-wk' 'Math-Tests-FunctionFit' 'Math-Tests-AutomaticDifferenciation' 'Math-Tests-FastFourierTransform' 'Math-Tests-Accuracy' 'ArbitraryPrecisionFloatTests' 'Math-Tests-KolmogorovSmirnov');
                group: 'Extensions'
                    with:
                        #('Math-ComplexExtensions' 'Math-Number-Extensions' 'Math-QuaternionExtensions' 'Math-DHB-NumericalExtensions' 'Math-DHB-wk' 'Math-FunctionFit' 'Math-AutomaticDifferenciation' 'Math-KernelSmoothing' 'Math-KolmogorovSmirnov');
                group: 'Benchmarks' with: #('Math-Benchmarks-ODE' 'Math-Benchmarks-KDTree');
                group: 'Accuracy' with: #('Math-Accuracy-ODE' 'Math-Accuracy-Core') ]

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stephane ducasse-2
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Re: New baseline

stephane ducasse-2
So I have a failure on development. I will try to address it tomorrow if I have internet.

Stef

On Thursday, March 3, 2016 at 9:37:39 PM UTC+1, Stéphane Ducasse wrote:
Hi guys

I continued to split packages into smaller packages :)
Here is the new baseline that I will push for development

I will published a new version 42 but I will not declare it as stable before being sure.

insights:

                package: 'Math-Chromosome' with: [ spec requires: #('Math-Core') ];
                package: 'Math-PrincipleComponentAnalysis' with: [ spec requires: #('Math-UtilsAccumulator') ];
                package: 'Math-RandomDistributionBased' with: [ spec requires: #('Math-DHB-Numerical') ];
                package: 'Math-UtilsDataServer';
               
Then after I will fix the metacello to be sure that we can use versionner because it is getting tedious to manag
all the packages.


Here is the log

- Merge changes made in 41 but lost when the latest configuration was not loaded. in 42
- changes made with didier
    - added hook flat generator in distribution
    - added asArray and dimension
    - CPA first cut
    - distribution based random number generator
- new packages -> new baseline 28
                package: 'Math-Chromosome' with: [ spec requires: #('Math-Core') ];
                package: 'Math-PrincipleComponentAnalysis' with: [ spec requires: #('Math-UtilsAccumulator') ];
                package: 'Math-RandomDistributionBased' with: [ spec requires: #('Math-DHB-Numerical') ];
                package: 'Math-UtilsDataServer';

For now 42 is not declared as stable. Should be done once jenkins is run.

Stef



baseline028: spec
    <version: '0.28-baseline'>
    spec
        for: #common
        do: [
            spec blessing: #baseline.
            spec description: 'After didier hacking + adding more packages'.
           spec author: 'Stephane Ducasse Stinckwich'.
           spec timestamp: '4 March 2016'.
            spec repository: '<a href="http://www.smalltalkhub.com/mc/SergeStinckwich/SciSmalltalk/main" target="_blank" rel="nofollow" onmousedown="this.href=&#39;http://www.google.com/url?q\75http%3A%2F%2Fwww.smalltalkhub.com%2Fmc%2FSergeStinckwich%2FSciSmalltalk%2Fmain\46sa\75D\46sntz\0751\46usg\75AFQjCNEeQwFl3S2HneDlXo1pGSvsn5eAuA&#39;;return true;" onclick="this.href=&#39;http://www.google.com/url?q\75http%3A%2F%2Fwww.smalltalkhub.com%2Fmc%2FSergeStinckwich%2FSciSmalltalk%2Fmain\46sa\75D\46sntz\0751\46usg\75AFQjCNEeQwFl3S2HneDlXo1pGSvsn5eAuA&#39;;return true;">http://www.smalltalkhub.com/mc/SergeStinckwich/SciSmalltalk/main'.
            spec
                project: 'SMark'
                    with: [
                            spec
                                className: #ConfigurationOfSMark;
                                versionString: '1.0.1';
                                repository: '<a href="http://smalltalkhub.com/mc/StefanMarr/SMark/main" target="_blank" rel="nofollow" onmousedown="this.href=&#39;http://www.google.com/url?q\75http%3A%2F%2Fsmalltalkhub.com%2Fmc%2FStefanMarr%2FSMark%2Fmain\46sa\75D\46sntz\0751\46usg\75AFQjCNFYG5iTbznuMWGCG2WadpBhec4ixg&#39;;return true;" onclick="this.href=&#39;http://www.google.com/url?q\75http%3A%2F%2Fsmalltalkhub.com%2Fmc%2FStefanMarr%2FSMark%2Fmain\46sa\75D\46sntz\0751\46usg\75AFQjCNFYG5iTbznuMWGCG2WadpBhec4ixg&#39;;return true;">http://smalltalkhub.com/mc/StefanMarr/SMark/main' ];
                project: 'XMLWriter'
                    with: [
                            spec
                                className: #ConfigurationOfXMLWriter;
                                versionString: '2.3.9';
                                repository: '<a href="http://smalltalkhub.com/mc/PharoExtras/XMLWriter/main" target="_blank" rel="nofollow" onmousedown="this.href=&#39;http://www.google.com/url?q\75http%3A%2F%2Fsmalltalkhub.com%2Fmc%2FPharoExtras%2FXMLWriter%2Fmain\46sa\75D\46sntz\0751\46usg\75AFQjCNEt2m7QWtDLJdE6HYVSqpk6lt-rjw&#39;;return true;" onclick="this.href=&#39;http://www.google.com/url?q\75http%3A%2F%2Fsmalltalkhub.com%2Fmc%2FPharoExtras%2FXMLWriter%2Fmain\46sa\75D\46sntz\0751\46usg\75AFQjCNEt2m7QWtDLJdE6HYVSqpk6lt-rjw&#39;;return true;">http://smalltalkhub.com/mc/PharoExtras/XMLWriter/main' ].
            spec
                package: 'Math-Core';
                package: 'Math-Core-Process';
                package: 'Math-Core-Distribution' with: [ spec requires: 'Math-Core' ];
               
                package: 'Math-UtilsAccumulator' with: [ spec requires: #('Math-Core') ];
                package: 'Math-Chromosome' with: [ spec requires: #('Math-Core') ];
                package: 'Math-PrincipleComponentAnalysis' with: [ spec requires: #('Math-UtilsAccumulator') ];
                package: 'Math-RandomDistributionBased' with: [ spec requires: #('Math-DHB-Numerical') ];
                package: 'Math-UtilsDataServer';
               
               
                package: 'Math-Series';
                package: 'Math-DistributionGamma' with: [ spec requires: #('Math-Core-Distribution') ];
                package: 'Math-DistributionBeta' with: [ spec requires: #('Math-DistributionGamma') ];
                package: 'Math-DistributionForHistogram' with: [ spec requires: #('Math-Core-Distribution') ];
                package: 'Math-Random';
   
                package: 'Math-KDTree';
                package: 'Math-Complex';
                package: 'Math-Quaternion' with: [ spec requires: #('Math-Complex') ];
                package: 'Math-DHB-Numerical'
                    with: [
                            spec
                                requires:
                                    #('Math-Core' 'Math-Core-Process' 'Math-Core-Distribution' 'Math-DistributionGamma' 'Math-DistributionBeta' 'Math-DistributionForHistogram' 'Math-StatisticalMoments' 'Math-Series') ];
                package: 'Math-FastFourierTransform' with: [ spec requires: #('Math-Complex') ];
                package: 'ExtendedNumberParser';
                package: 'ArbitraryPrecisionFloat' with: [ spec requires: #('ExtendedNumberParser') ];
                package: 'Math-ComplexExtensions' with: [ spec requires: #('Math-Complex' 'Math-DHB-Numerical') ];
                package: 'Math-DHB-NumericalExtensions' with: [ spec requires: #('Math-DHB-Numerical') ];
                package: 'Math-ODE' with: [ spec requires: #('Math-DHB-Numerical' 'Math-DHB-NumericalExtensions') ];
                package: 'Math-QuaternionExtensions' with: [ spec requires: #('Math-DHB-Numerical' 'Math-Quaternion') ];
                package: 'Math-DHB-wk' with: [ spec requires: #('Math-DHB-Numerical') ];
                package: 'Math-AutomaticDifferenciation' with: [ spec requires: #('Math-DHB-Numerical') ];
                package: 'Math-Quantile';
                package: 'Math-KernelSmoothing' with: [ spec requires: #('Math-Quantile' 'Math-DHB-Numerical') ];
                package: 'Math-KolmogorovSmirnov' with: [ spec requires: #('Math-DHB-Numerical') ];
                package: 'Math-Tests-KolmogorovSmirnov' with: [ spec requires: #('Math-DHB-Numerical' 'Math-KolmogorovSmirnov') ];
                package: 'Math-Tests-Random' with: [ spec requires: #('Math-Random') ];
                package: 'Math-Tests-Complex' with: [ spec requires: #('Math-ComplexExtensions') ];
                package: 'Math-Tests-KDTree' with: [ spec requires: #('Math-KDTree') ];
               
                package: 'Math-Tests-DHB-Numerical' with: [ spec requires: #('Math-DHB-Numerical' 'Math-UtilsDataServer') ];
                package: 'Math-Tests-ODE' with: [ spec requires: #('Math-ODE') ];
                package: 'Math-Tests-Quaternion' with: [ spec requires: #('Math-Quaternion') ];
                package: 'Math-Tests-DHB-wk' with: [ spec requires: #('Math-DHB-wk') ];
                package: 'Math-Tests-AutomaticDifferenciation' with: [ spec requires: #('Math-AutomaticDifferenciation') ];
                package: 'Math-Tests-FastFourierTransform'
                    with: [ spec requires: #('Math-FastFourierTransform' 'Math-DHB-Numerical') ];
                package: 'ArbitraryPrecisionFloatTests' with: [ spec requires: #('ArbitraryPrecisionFloat') ];
                package: 'Math-Accuracy-Core';
                package: 'Math-Tests-Accuracy' with: [ spec requires: #('Math-Accuracy-Core') ];
                package: 'Math-FunctionFit' with: [ spec requires: #('Math-DHB-Numerical' 'Math-Accuracy-Core' 'Math-Core') ];
                package: 'Math-Tests-FunctionFit' with: [ spec requires: #('Math-FunctionFit' 'Math-DHB-wk') ];
                package: 'Math-Benchmarks-KDTree' with: [ spec requires: #('Math-KDTree' 'SMark') ];
                package: 'Math-Accuracy-ODE' with: [ spec requires: #('Math-ODE' 'XMLWriter') ];
                package: 'Math-Benchmarks-ODE' with: [ spec requires: #('Math-ODE' 'SMark' 'XMLWriter') ];
                package: 'Math-Number-Extensions';
                package: 'Math-StatisticalMoments' with: [ spec requires: #('Math-Core' 'Math-DistributionForHistogram') ].
            spec
                group: 'default' with: #('Core' 'Extensions' 'Tests' 'Benchmarks' 'Accuracy');
                group: 'Core'
                    with:
                        #('Math-Complex' 'Math-Quaternion' 'Math-DHB-Numerical' 'Math-Random' 'Math-KDTree' 'Math-ODE' 'ArbitraryPrecisionFloat' 'Math-FastFourierTransform' 'ExtendedNumberParser' 'Math-Quantile' );
                group: 'Tests'
                    with:
                        #('Math-Tests-DHB-Numerical' 'Math-Tests-Complex' 'Math-Tests-Quaternion' 'Math-Tests-Random' 'Math-Tests-ODE' 'Math-Tests-KDTree' 'Math-Tests-DHB-wk' 'Math-Tests-FunctionFit' 'Math-Tests-AutomaticDifferenciation' 'Math-Tests-FastFourierTransform' 'Math-Tests-Accuracy' 'ArbitraryPrecisionFloatTests' 'Math-Tests-KolmogorovSmirnov');
                group: 'Extensions'
                    with:
                        #('Math-ComplexExtensions' 'Math-Number-Extensions' 'Math-QuaternionExtensions' 'Math-DHB-NumericalExtensions' 'Math-DHB-wk' 'Math-FunctionFit' 'Math-AutomaticDifferenciation' 'Math-KernelSmoothing' 'Math-KolmogorovSmirnov');
                group: 'Benchmarks' with: #('Math-Benchmarks-ODE' 'Math-Benchmarks-KDTree');
                group: 'Accuracy' with: #('Math-Accuracy-ODE' 'Math-Accuracy-Core') ]

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Re: New baseline

stephane ducasse-2
In reply to this post by stephane ducasse-2
Hi all

I published as stable the version 42.
What is strange is that the gaussian distribution test fails on jenkins in Pharo 40 but when I download the image and run the tests on my machine they are green.
After the development version is working on 40.

I have to check why on Pharo 50 both stable and dev are failing.

Stef

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Re: New baseline

SergeStinckwich
Thank you Stéphane for your cleaning activities :-)

On Fri, Mar 4, 2016 at 8:31 AM, Stéphane Ducasse
<[hidden email]> wrote:

> Hi all
>
> I published as stable the version 42.
> What is strange is that the gaussian distribution test fails on jenkins in
> Pharo 40 but when I download the image and run the tests on my machine they
> are green.
> After the development version is working on 40.
>
> I have to check why on Pharo 50 both stable and dev are failing.
>
> Stef
>
> --
> You received this message because you are subscribed to the Google Groups
> "SciSmalltalk" group.
> To unsubscribe from this group and stop receiving emails from it, send an
> email to [hidden email].
> For more options, visit https://groups.google.com/d/optout.



--
Serge Stinckwich
UCBN & UMI UMMISCO 209 (IRD/UPMC)
Every DSL ends up being Smalltalk
http://www.doesnotunderstand.org/

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Re: New baseline

SergeStinckwich
In reply to this post by stephane ducasse-2
On Fri, Mar 4, 2016 at 8:31 AM, Stéphane Ducasse
<[hidden email]> wrote:
> Hi all
>
> I published as stable the version 42.
> What is strange is that the gaussian distribution test fails on jenkins in
> Pharo 40 but when I download the image and run the tests on my machine they
> are green.

Yes we have this test failing from time to time ...
We discuss about that recently :
https://groups.google.com/d/msg/scismalltalk/Pzddk3Q0Txw/pT_-KEDfEAAJ
We have to change the tests.

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Serge Stinckwich
UCBN & UMI UMMISCO 209 (IRD/UPMC)
Every DSL ends up being Smalltalk
http://www.doesnotunderstand.org/

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stephane ducasse-2
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Re: New baseline

stephane ducasse-2
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The job in Pharo 50 are strange because some tests are red on jenkins but when I run them locally all the tests are green.
I imagine that this may be because of floats comparison or something like that.
It would be great if people knowing could fix them.

I plan to relax from the mooc to make sure that we can manage the configuration with versionner because right now this tedious.
And after I plan to do

 a massive renaming. We could make it

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stephane ducasse-2
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Re: New baseline

stephane ducasse-2
And after I plan to do
   - finish to extract packages from DHB
   - I would love to have class comments for each class. What would be great is that
   we extract the class comment from the book section and ask didier or other to validate them and
   we include them in the library.
   - we could do a release
   - a massive renaming with a better prefix than DHB from place to place
   - change the book accordingly
   - then we could do a new release SciPharo and the book

Then this library should be ready for cormas and mobydic to use them to great a momentum.


On Saturday, March 5, 2016 at 8:38:27 AM UTC+1, Stéphane Ducasse wrote:
The job in Pharo 50 are strange because some tests are red on jenkins but when I run them locally all the tests are green.
I imagine that this may be because of floats comparison or something like that.
It would be great if people knowing could fix them.

I plan to relax from the mooc to make sure that we can manage the configuration with versionner because right now this tedious.
And after I plan to do

 a massive renaming. We could make it

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