Hi Hans,
> does anyone work on Squeak stuff for system biology (Pi Calculus
> simulation systems, for example)
you might want to have a look on
http://www.iam.unibe.ch/~scg/Research/Piccola/> , silicon cell (for example like e-cell )
Don't know.
> or other bioinformatics stuff (statistic datamining)?
Didier Besset
"Object-Oriented Implementation of Numerical Methods"
includes a chapter on data mining:
12.1 Data Server
12.1.1 Data Server—Smalltalk Implementation
12.1.2 Data Server—Java Implementation
12.2 Covariance and Covariance Matrix
12.2.1 Using Covariance Information
12.2.2 Covariance Matrix—General Implementation
12.2.3 Covariance Matrix—Smalltalk Implementation
12.2.4 Covariance Matrix—Java Implementation
12.3 Multidimensional Probability Distribution
12.4 Covariance Data Reduction
12.5 Mahalanobis Distance
12.5.1 Examples of Use
12.5.2 Mahalanobis Distance—General Implementation
12.5.3 Mahalanobis Distance—Smalltalk Implementation
12.5.4 Mahalanobis Distance—Java Implementation
12.6 Cluster Analysis
12.6.1 Algorithm Details
12.6.2 Cluster Analysis—General Implementation
12.6.3 Cluster Analysis—Smalltalk Implementation
12.6.4 Cluster Analysis—Java Implementation
12.7 Covariance Clusters
12.7.1 Covariance Clusters—General Implementation
Code should be on SqueakMap
Cheers,
Markus
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